[ 原始碼： mhap ]
套件：mhap（2.1.3+dfsg-2）
locality-sensitive hashing to detect long-read overlaps
The MinHash Alignment Process (MHAP--pronounced MAP) is a reference implementation of a probabilistic sequence overlapping algorithm. Designed to efficiently detect all overlaps between noisy long-read sequence data. It efficiently estimates Jaccard similarity by compressing sequences to their representative fingerprints composed on min-mers (minimum k-mer).
其他與 mhap 有關的套件
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- dep: default-jre-headless
- Standard Java or Java compatible Runtime (headless)
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- dep: jaligner
- Smith-Waterman algorithm with Gotoh's improvement
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- dep: jarwrapper
- Run executable Java .jar files
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- dep: libcommons-compress-java
- Java API for working with compression and archive formats
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- dep: libfastutil-java
- Java API providing type-specific maps, sets, lists and queues
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- dep: libguava-java (>= 19)
- Suite of Google common libraries for Java
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- dep: libssw-java
- Java bindings for libssw