[ 原始碼： debian-med ]
套件：med-bio-dev（3.3）
Debian Med packages for development of bioinformatics applications
This metapackage will install Debian packages which might be helpful for development of applications for biological research.
其他與 med-bio-dev 有關的套件
|
|
|
|
-
- dep: med-config (= 3.3)
- Debian Med general config package
-
- dep: med-tasks (= 3.3)
- Debian Med tasks for tasksel
-
- rec: bio-tradis
- analyse the output from TraDIS analyses of genomic sequences
-
- rec: bioperl
- Perl tools for computational molecular biology
-
- rec: bioperl-run
- BioPerl wrappers: scripts
-
- rec: biosquid
- utilities for biological sequence analysis
-
- rec: cwltool
- Common Workflow Language reference implementation
-
- rec: libace-perl
- Object-Oriented Access to ACEDB Databases
-
- rec: libai-fann-perl
- Perl wrapper for the FANN library
-
- rec: libbambamc-dev
- Development files for reading and writing BAM (genome alignment) files
-
- rec: libbamtools-dev
- C++ API for manipulating BAM (genome alignment) files
-
- rec: libbio-asn1-entrezgene-perl
- parser for NCBI Entrez Gene and NCBI Sequence records
-
- rec: libbio-chado-schema-perl
- DBIx::Class layer for the Chado database schema
-
- rec: libbio-coordinate-perl
- BioPerl modules for working with biological coordinates
-
- rec: libbio-das-lite-perl
- implementation of the BioDas protocol
-
- rec: libbio-eutilities-perl
- BioPerl interface to the Entrez Programming Utilities (E-utilities)
-
- rec: libbio-graphics-perl
- Generate GD images of Bio::Seq objects
-
- rec: libbio-mage-perl
- Container module for classes in the MAGE package: MAGE
-
- rec: libbio-mage-utils-perl
- Extra modules for classes in the MAGE package: MAGE
-
- rec: libbio-primerdesigner-perl
- Perl module to design PCR primers using primer3 and epcr
-
- rec: libbio-samtools-perl
- Perl interface to SamTools library for DNA sequencing
-
- rec: libbio-scf-perl
- Perl extension for reading and writing SCF sequence files
-
- rec: libbio-tools-phylo-paml-perl
- Bioperl interface to the PAML suite
-
- rec: libbio-tools-run-alignment-clustalw-perl
- Bioperl interface to Clustal W
-
- rec: libbio-tools-run-alignment-tcoffee-perl
- Bioperl interface to T-Coffee
-
- rec: libbiococoa-dev
- Bioinformatics framework for GNUstep and Cocoa (development files)
-
- rec: libbiojava-java
- Java API to biological data and applications (default version)
-
- rec: libbiojava4-java
- Java API to biological data and applications (default version)
同時作為一個虛擬套件由這些套件填實： libbiojava4-java
-
- rec: libbioparser-dev
- library for parsing several formats in bioinformatics
-
- rec: libblasr-dev
- tools for aligning PacBio reads to target sequences (development files)
-
- rec: libbpp-core-dev
- Bio++ Core library development files
-
- rec: libbpp-phyl-dev
- Bio++ Phylogenetic library development files
-
- rec: libbpp-phyl-omics-dev
- Bio++ Phylogenetics library: genomics components (development files)
-
- rec: libbpp-popgen-dev
- Bio++ Population Genetics library development files
-
- rec: libbpp-qt-dev
- Bio++ Qt Graphic classes library development files
-
- rec: libbpp-raa-dev
- Bio++ Remote Acnuc Access library development files
-
- rec: libbpp-seq-dev
- Bio++ Sequence library development files
-
- rec: libbpp-seq-omics-dev
- Bio++ Sequence library: genomics components (development files)
-
- rec: libchado-perl
- database schema and tools for genomic data
-
- rec: libconsensuscore-dev
- algorithms for PacBio multiple sequence consensus -- development files
-
- rec: libdivsufsort-dev
- libdivsufsort header files
-
- rec: libedlib-dev
- library for sequence alignment using edit distance (devel)
-
- rec: libfast5-dev
- library for reading Oxford Nanopore Fast5 files -- headers
-
- rec: libfastahack-dev
- library for indexing and sequence extraction from FASTA files (devel)
-
- rec: libffindex0-dev
- library for simple index/database for huge amounts of small files (development)
-
- rec: libfml-dev
- development headers for libfml
-
- rec: libfreecontact-dev
- fast protein contact predictor library - development files
同時作為一個虛擬套件由這些套件填實： libfreecontact-dev
-
- rec: libfreecontact-perl
- fast protein contact predictor - binding for Perl
-
- rec: libgatbcore-dev
- development library of the Genome Analysis Toolbox
-
- rec: libgenome-dev
- toolkit for developing bioinformatic related software (devel)
-
- rec: libgenome-model-tools-music-perl
- module for finding mutations of significance in cancer
-
- rec: libgenome-perl
- pipelines, tools, and data management for genomics
-
- rec: libgenometools0-dev
- development files for GenomeTools
-
- rec: libgff-dev
- GFF/GTF parsing from cufflinks as a library
-
- rec: libgkarrays-dev
- library to query large collection of NGS sequences (development)
-
- rec: libgo-perl
- perl modules for GO and other OBO ontologies
-
- rec: libhmsbeagle-dev
- High-performance lib for Bayesian and Maximum Likelihood phylogenetics (devel)
-
- rec: libhts-dev
- development files for the HTSlib
-
- rec: libhtsjdk-java
- Java API for high-throughput sequencing data (HTS) formats
-
- rec: libjebl2-java
- Java Evolutionary Biology Library
-
- rec: libjloda-java
- Java library of data structures and algorithms for bioinformatics
-
- rec: libkmer-dev
- suite of tools for DNA sequence analysis (development lib)
-
- rec: libmems-dev
- development library to support DNA string matching and comparative genomics
-
- rec: libminimap-dev
- development headers for libminimap
-
- rec: libmuscle-dev
- multiple alignment development library for protein sequences
-
- rec: libncbi-vdb-dev
- libraries for using data in the INSDC Sequence Read Archives (devel)
-
- rec: libncbi6-dev
- NCBI libraries for biology applications (development files)
-
- rec: libncl-dev
- NEXUS Class Library (static lib and header files)
-
- rec: libngs-java
- Next Generation Sequencing language Bindings (Java bindings)
-
- rec: libngs-sdk-dev
- Next Generation Sequencing language Bindings (development)
-
- rec: libnhgri-blastall-perl
- Perl extension for running and parsing NCBI's BLAST 2.x
-
- rec: libopenms-dev
- library for LC/MS data management and analysis - dev files
-
- rec: libpal-java
- Phylogenetic Analysis Library
-
- rec: libpbbam-dev
- Pacific Biosciences binary alignment/map (BAM) library (headers)
-
- rec: libpbdata-dev
- tools for handling PacBio sequences (development files)
-
- rec: libpbihdf-dev
- tools for handling PacBio hdf5 files (development files)
-
- rec: libpbseq-dev
- library for analyzing PacBio sequencing data (development files)
-
- rec: libpll-dev
- Phylogenetic Likelihood Library (development)
-
- rec: libqes-dev
- DNA sequence parsing library -- development
-
- rec: librcsb-core-wrapper0-dev
- development files for librcsb-core-wrapper0
-
- rec: librdp-taxonomy-tree-java
- taxonomy tree library from Ribosomal Database Project (RDP)
-
- rec: librelion-dev
- C++ API for RELION (3D reconstructions in cryo-electron microscopy)
-
- rec: librg-blast-parser-perl
- very fast NCBI BLAST parser - binding for Perl
-
- rec: librg-reprof-bundle-perl
- protein secondary structure and accessibility predictor (perl module)
-
- rec: librostlab-blast0-dev
- very fast C++ library for parsing the output of NCBI BLAST programs (devel)
-
- rec: librostlab3-dev
- C++ library for computational biology (development)
-
- rec: libsbml5-dev
- System Biology Markup Language library - development files
-
- rec: libseqlib-dev
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
-
- rec: libsmithwaterman-dev
- determine similar regions between two strings or genomic sequences (devel)
-
- rec: libsnp-sites1-dev
- Static libraries and header files for the package snp-sites
-
- rec: libsort-key-top-perl
- Perl module to select and sort top n elements of a list
-
- rec: libspoa-dev
- SIMD partial order alignment library (development files)
-
- rec: libsrf-dev
- C++ implementation of the SRF format for DNA sequence data
-
- rec: libssm-dev
- macromolecular superposition library - development files
-
- rec: libssw-dev
- Development headers and static libraries for libssw
同時作為一個虛擬套件由這些套件填實： libssw-dev
-
- rec: libssw-java
- Java bindings for libssw
-
- rec: libstaden-read-dev
- development files for libstaden-read
-
- rec: libstatgen-dev
- development files for the libStatGen
-
- rec: libswiss-perl
- Perl API to the UniProt database
-
- rec: libtabixpp-dev
- C++ wrapper to tabix indexer (development files)
同時作為一個虛擬套件由這些套件填實： libtabixpp-dev
-
- rec: libtfbs-perl
- scanning DNA sequence with a position weight matrix
-
- rec: libthread-pool-dev
- C++ thread pool library (devel)
-
- rec: libvcflib-dev
- C++ library for parsing and manipulating VCF files (development)
-
- rec: libvibrant6-dev
- NCBI libraries for graphic biology applications (development files)
-
- rec: libzerg-perl
- fast perl module for parsing the output of NCBI BLAST programs
-
- rec: libzerg0-dev
- development libraries and header files for libzerg
-
- rec: mcl
- Markov Cluster algorithm
-
- rec: pyfai
- Fast Azimuthal Integration scripts
-
- rec: python-biom-format
- Biological Observation Matrix (BIOM) format (Python 2)
-
- rec: python-cogent
- framework for genomic biology
-
- rec: python-corepywrap
- library that exports C++ mmCIF accessors to Python
-
- rec: python-freecontact
- fast protein contact predictor - binding for Python
-
- rec: python-htseq
- Python high-throughput genome sequencing read analysis utilities
同時作為一個虛擬套件由這些套件填實： python3-htseq
-
- rec: python-kineticstools
- detection of DNA modifications (Python 2 library)
-
- rec: python-pbcommand
- common command-line interface for Pacific Biosciences analysis modules
-
- rec: python-pbcore
- Python 2 library for processing PacBio data files
-
- rec: python-pbh5tools
- tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library
-
- rec: python-rdkit
- Collection of cheminformatics and machine-learning software
-
- rec: python3-airr
- Data Representation Standard library for antibody and TCR sequences
-
- rec: python3-bcbio
- library for analysing high-throughput sequencing data
-
- rec: python3-biomaj3
- BioMAJ workflow management library
-
- rec: python3-biopython
- Python library for bioinformatics (implemented in Python 3)
-
- rec: python3-biotools
- Python3 bioinformatics utilities for high-throughput genomic sequencing
-
- rec: python3-bx
- library to manage genomic data and its alignment
-
- rec: python3-cobra
- constraint-based modeling of biological networks with Python 3
-
- rec: python3-csb
- Python framework for structural bioinformatics (Python3 version)
-
- rec: python3-cutadapt
- Clean biological sequences from high-throughput sequencing reads (Python 3)
-
- rec: python3-cyvcf2
- VCF parser based on htslib (Python 3)
-
- rec: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
-
- rec: python3-fast5
- library for reading Oxford Nanopore Fast5 files -- Python 3
-
- rec: python3-gfapy
- flexible and extensible software library for handling sequence graphs
-
- rec: python3-gffutils
- Work with GFF and GTF files in a flexible database framework
-
- rec: python3-intervaltree-bio
- Interval tree convenience classes for genomic data -- Python 3 library
-
- rec: python3-ngs
- Next Generation Sequencing language Bindings (Python3 bindings)
-
- rec: python3-pbconsensuscore
- algorithms for PacBio multiple sequence consensus -- Python 3
-
- rec: python3-presto
- toolkit for processing B and T cell sequences
-
- rec: python3-pybedtools
- Python 3 wrapper around BEDTools for bioinformatics work
-
- rec: python3-pybel
- Biological Expression Language
-
- rec: python3-pyfaidx
- efficient random access to fasta subsequences for Python 3
-
- rec: python3-pymummer
- Python 3 interface to MUMmer
-
- rec: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- rec: python3-pyvcf
- Variant Call Format (VCF) parser for Python 3
-
- rec: python3-ruffus
- Python3 computation pipeline library widely used in bioinformatics
-
- rec: python3-screed
- short nucleotide read sequence utils in Python 3
-
- rec: python3-sqt
- SeQuencing Tools for biological DNA/RNA high-throughput data
-
- rec: python3-treetime
- inference of time stamped phylogenies and ancestral reconstruction (Python 3)
-
- rec: r-bioc-biobase
- base functions for Bioconductor
-
- rec: r-cran-genetics
- GNU R package for population genetics
-
- rec: r-cran-haplo.stats
- GNU R package for haplotype analysis
-
- rec: r-cran-phylobase
- GNU R base package for phylogenetic structures and comparative data
-
- rec: r-cran-rncl
- GNU R interface to the Nexus Class Library
-
- rec: r-cran-rnexml
- GNU R package for semantically rich I/O for the 'NeXML' format
-
- rec: ruby-bio
- Ruby tools for computational molecular biology
-
- rec: ruby-crb-blast
- Run conditional reciprocal best blast
-
- rec: sbmltoolbox
- libsbml toolbox for octave and matlab
-
- rec: seqan-dev
- C++ library for the analysis of biological sequences (development)
-
- rec: snakemake
- pythonic workflow management system
-
- rec: toil
- cross-platform workflow engine
-
- sug: bioclipse
- 套件暫時不可用
-
- sug: ctdconverter
- Convert CTD files into Galaxy tool and CWL CommandLineTool files
-
- sug: galaxy-lib
- 套件暫時不可用
-
- sug: libbam-dev
- manipulates nucleotide sequence alignments in BAM or SAM format
-
- sug: libbigwig-dev
- 套件暫時不可用
-
- sug: libbiod-dev
- 套件暫時不可用
-
- sug: libdisorder-dev
- library for entropy measurement of byte streams (devel)
-
- sug: libforester-java
- 套件暫時不可用
-
- sug: libfreecontact-doc
- documentation for libfreecontact
-
- sug: libgoby-java
- 套件暫時不可用
-
- sug: libgtextutils-dev
- Gordon Text_utils library (development files)
-
- sug: libmilib-java
- library for Next Generation Sequencing (NGS) data processing
-
- sug: libmodhmm-dev
- library for constructing, training and scoring hidden Markov models (dev)
-
- sug: libnexml-java
- 套件暫時不可用
-
- sug: libpbcopper-dev
- data structures, algorithms, and utilities for C++ applications -- header files
-
- sug: libqcpp-dev
- 套件暫時不可用
-
- sug: libroadrunner-dev
- 套件暫時不可用
-
- sug: librostlab-blast-doc
- very fast C++ library for parsing the output of NCBI BLAST programs (doc)
-
- sug: librostlab-doc
- C++ library for computational biology (documentation)
-
- sug: libsvmloc-dev
- PSORTb adapted library for svm machine-learning library (dev)
-
- sug: libswarm2-dev
- 套件暫時不可用
-
- sug: mgltools-networkeditor
- Python GUI library for the editing of networks
-
- sug: mgltools-pybabel
- molecular structure file access and interpretation
-
- sug: mgltools-vision
- Python-based Visual Programming Environment
-
- sug: octace-bioinfo
- 套件暫時不可用
-
- sug: python-biopython-doc
- Documentation for the Biopython library
-
- sug: python-mmtk
- 套件暫時不可用
-
- sug: python-pyflow
- lightweight parallel task engine for Python
-
- sug: python-roadrunner
- 套件暫時不可用
-
- sug: python-screed
- 套件暫時不可用
-
- sug: python3-biopython-sql
- Biopython support for the BioSQL database schema (Python 3)
-
- sug: python3-cgecore
- 套件暫時不可用
-
- sug: python3-consensuscore2
- 套件暫時不可用
-
- sug: python3-ctdopts
- Gives your Python tools a CTD-compatible interface
-
- sug: python3-ete3
- 套件暫時不可用
-
- sug: python3-hyphy
- 套件暫時不可用
-
- sug: python3-mirtop
- 套件暫時不可用
-
- sug: python3-misopy
- 套件暫時不可用
-
- sug: python3-seqcluster
- 套件暫時不可用
-
- sug: python3-skbio
- 套件暫時不可用
-
- sug: r-bioc-affy
- BioConductor methods for Affymetrix Oligonucleotide Arrays
-
- sug: r-bioc-affyio
- BioConductor tools for parsing Affymetrix data files
-
- sug: r-bioc-altcdfenvs
- BioConductor alternative CDF environments
-
- sug: r-bioc-annotationdbi
- GNU R Annotation Database Interface for BioConductor
-
- sug: r-bioc-biocgenerics
- generic functions for Bioconductor
-
- sug: r-bioc-biomart
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
-
- sug: r-bioc-biomformat
- GNU R interface package for the BIOM file format
-
- sug: r-bioc-biovizbase
- GNU R basic graphic utilities for visualization of genomic data
-
- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
-
- sug: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
-
- sug: r-bioc-genomicalignments
- BioConductor representation and manipulation of short genomic alignments
-
- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
-
- sug: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
-
- sug: r-bioc-graph
- handle graph data structures for BioConductor
-
- sug: r-bioc-hypergraph
- BioConductor hypergraph data structures
-
- sug: r-bioc-iranges
- GNU R low-level containers for storing sets of integer ranges
-
- sug: r-bioc-makecdfenv
- BioConductor CDF Environment Maker
-
- sug: r-bioc-preprocesscore
- BioConductor collection of pre-processing functions
-
- sug: r-bioc-rbgl
- R interface to the graph algorithms contained in the BOOST library
-
- sug: r-bioc-rsamtools
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
-
- sug: r-bioc-shortread
- GNU R classes and methods for high-throughput short-read sequencing data
-
- sug: r-bioc-snpstats
- BioConductor SnpMatrix and XSnpMatrix classes and methods
-
- sug: r-bioc-variantannotation
- BioConductor annotation of genetic variants
-
- sug: r-bioc-xvector
- BioConductor representation and manpulation of external sequences
-
- sug: r-cran-natserv
- GNU R 'NatureServe' Interface
-
- sug: r-cran-rentrez
- GNU R interface to the NCBI's EUtils API
-
- sug: r-cran-rocr
- GNU R package to prepare and display ROC curves
-
- sug: ruby-rgfa
- parse, edit and write GFA format graphs in Ruby
-
- sug: vdjtools
- 套件暫時不可用