套件：r-bioc-limma（3.46.0+dfsg-1）

[ 原始碼： r-bioc-limma  ]

linear models for microarray data

Microarrays are microscopic plates with carefully arranged short DNA strands and/or chemically prepared surfaces to which other DNA preferably binds. The amount of DNA binding at different locations of these chips, typically determined by a fluorescent dye, is to be interpreted. The technology is typically used with DNA that is derived from RNA, i.e to determine the activity of a gene and/or its splice variants. But the technology is also used to determine sequence variations in genomic DNA.

This Bioconductor package supports the analysis of gene expression microarray data, especially the use of linear models for analysing designed experiments and the assessment of differential expression. The package includes pre-processing capabilities for two-colour spotted arrays. The differential expression methods apply to all array platforms and treat Affymetrix, single channel and two channel experiments in a unified way.

標籤: 生物學: 核酸, 領域: 生物學, field::biology:bioinformatics, implemented-in::r, 使用者介面: 命令行, 角色: 程式

其他與 r-bioc-limma 有關的套件

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

  dep: libc6 (>= 2.4) [除 arm64, ppc64el]

• dep: r-api-4.0

  本虛擬套件由這些套件填實： r-base-core

• dep: r-api-bioc-3.12

  本虛擬套件由這些套件填實： r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  GNU R core of statistical computation and graphics system

• rec: r-bioc-go.db

  annotation maps describing the entire Gene Ontology

• rec: r-bioc-org.hs.eg.db

  genome-wide annotation for Human

• rec: r-cran-locfit

  GNU R local regression, likelihood and density estimation

• rec: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• rec: r-cran-statmod (>= 1.2.2)

  GNU R package providing algorithms and functions for statistical modeling

• sug: r-bioc-affy

  BioConductor methods for Affymetrix Oligonucleotide Arrays

• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-cran-biasedurn

  GNU R Biased Urn model distributions

• sug: r-cran-ellipse

  GNU R functions for drawing ellipses and ellipse-like confidence regions

• sug: r-cran-gplots

  GNU R package with tools for plotting data by Greg Warnes et al

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