[ 原始碼： gasic ]
套件：gasic（0.0.r19-7）
gasic 的相關連結
Debian 的資源：
下載原始碼套件 gasic：
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Andreas Tille (QA 頁面)
- Navid Fehrenbacher (QA 頁面)
- Roland Fehrenbacher (QA 頁面)
外部的資源：
- 主頁 [sourceforge.net]
相似套件：
genome abundance similarity correction
One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods.
其他與 gasic 有關的套件
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- dep: bowtie
- Ultrafast memory-efficient short read aligner
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: bwa
- Burrows-Wheeler Aligner
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: seqan-apps
- C++ library for the analysis of biological sequences
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- sug: gasic-examples
- genome abundance similarity correction (example data)