套件：concavity（0.1+dfsg.1-5）

[ 原始碼： concavity  ]

predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

其他與 concavity 有關的套件

• dep: libc6 (>= 2.29)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• sug: conservation-code

  protein sequence conservation scoring tool

• sug: pymol

  Molecular Graphics System

下載 concavity

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	238。5 kB	973。0 kB	[檔案列表]
arm64	224。0 kB	941。0 kB	[檔案列表]
armel	224。9 kB	933。0 kB	[檔案列表]
armhf	222。9 kB	809。0 kB	[檔案列表]
i386	252。5 kB	1，020。0 kB	[檔案列表]
mips64el	252。7 kB	1，168。0 kB	[檔案列表]
mipsel	259。2 kB	1，112。0 kB	[檔案列表]
ppc64el	252。8 kB	1，130。0 kB	[檔案列表]
s390x	224。1 kB	969。0 kB	[檔案列表]