[ 原始碼： python-seqcluster ]
套件：python3-seqcluster（1.2.7+ds-1） [contrib]
python3-seqcluster 的相關連結
Debian 的資源：
下載原始碼套件 python-seqcluster：
- [python-seqcluster_1.2.7+ds-1.dsc]
- [python-seqcluster_1.2.7+ds.orig.tar.xz]
- [python-seqcluster_1.2.7+ds-1.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [github.com]
相似套件：
analysis of small RNA in NGS data
Identifies small RNA sequences of all sorts in RNA sequencing data. This is especially helpful for the identification of RNA that is neither coding nor belonging to the already well-established group of miRNA, towards many tools feel constrained to.
This package provides the Python module. For executables see the package 'seqcluster'.
其他與 python3-seqcluster 有關的套件
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-colorlog
- formatter to use with the logging module of Python 3
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- dep: python3-mirtop
- annotate miRNAs with a standard mirna/isomir naming (Python 3)
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- dep: python3-nose (>= 1.3.0)
- test discovery and running for Python3 unittest
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
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- dep: python3-progressbar (>= 2.3.0)
- text progress bar library for Python (Python 3)
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- dep: python3-pybedtools
- Python 3 wrapper around BEDTools for bioinformatics work
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-recommonmark
- CommonMark utility for Docutils and Sphinx projects -- Python 3
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- dep: python3-scipy (>= 0.15.1)
- scientific tools for Python 3
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- rec: bedtools
- suite of utilities for comparing genomic features
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- rec: fastqc
- quality control for high throughput sequence data
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- rec: libjs-bootstrap
- HTML, CSS and JS framework
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- rec: libjs-jquery
- JavaScript library for dynamic web applications
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- rec: libjs-jquery-datatables
- jQuery plug-in that makes nice tables from different data sources
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- rec: libjs-jquery-tablesorter
- jQuery flexible client-side table sorting plugin
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- rec: libjs-jquery-ui
- JavaScript UI library for dynamic web applications
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- rec: mirtop
- annotate miRNAs with a standard mirna/isomir naming
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- rec: python3-cutadapt
- Clean biological sequences from high-throughput sequencing reads (Python 3)
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- rec: python3-dateutils
- 套件暫時不可用
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- rec: python3-tz
- Python3 version of the Olson timezone database
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- rec: r-bioc-degreport
- BioConductor report of DEG analysis
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- rec: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
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- rec: r-bioc-edger
- Empirical analysis of digital gene expression data in R
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- rec: r-bioc-htsfilter
- GNU R filter replicated high-throughput transcriptome sequencing data
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- rec: r-cran-devtools
- Tools to Make Developing R Packages Easier
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- rec: r-cran-dplyr
- GNU R grammar of data manipulation
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- rec: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- rec: r-cran-gplots
- GNU R package with tools for plotting data by Greg Warnes et al
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- rec: r-cran-gridextra
- GNU R package with extensions for the grid package
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- rec: r-cran-gtools
- GNU R package with R programming tools by Greg Warnes et al
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- rec: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- rec: r-cran-pheatmap
- GNU R package to create pretty heatmaps
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- rec: r-cran-reshape
- Flexibly reshape data
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- rec: rna-star
- ultrafast universal RNA-seq aligner
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: vienna-rna
- RNA sequence analysis
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- sug: seqcluster
- analysis of small RNA in NGS data