[ 原始碼： r-cran-spp ]
套件：r-cran-spp（1.16.0-2）
GNU R ChIP-seq processing pipeline
R package for anlaysis of ChIP-seq and other functional sequencing data
* Assess overall DNA-binding signals in the data and select appropriate quality of tag alignment. * Discard or restrict positions with abnormally high number of tags. * Calculate genome-wide profiles of smoothed tag density and save them in WIG files for viewing in other browsers. * Calculate genome-wide profiles providing conservative statistical estimates of fold enrichment ratios along the genome. These can be exported for browser viewing, or thresholded to determine regions of significant enrichment/depletion. * Determine statistically significant point binding positions * Assess whether the set of point binding positions detected at a current sequencing depth meets saturation criteria, and if does not, estimate what sequencing depth would be required to do so.
其他與 r-cran-spp 有關的套件
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- dep: libbz2-1.0
- high-quality block-sorting file compressor library - runtime
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- dep: libc6 (>= 2.29)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: r-api-4.0
- 本虛擬套件由這些套件填實： r-base-core
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- dep: r-base-core (>= 4.0.2-1)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-rsamtools
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-cran-bh (>= 1.66)
- (Virtual) GNU R package to provide BH
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- dep: r-cran-catools
- GNU R package providing various utility functions
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- dep: r-cran-rcpp
- GNU R package for Seamless R and C++ Integration
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)