在 bullseye 發行版中 all 硬體架構下的 r-bioc-purecn 套件檔案清單

/usr/lib/R/site-library/PureCN/CITATION
/usr/lib/R/site-library/PureCN/DESCRIPTION
/usr/lib/R/site-library/PureCN/INDEX
/usr/lib/R/site-library/PureCN/Meta/Rd.rds
/usr/lib/R/site-library/PureCN/Meta/data.rds
/usr/lib/R/site-library/PureCN/Meta/features.rds
/usr/lib/R/site-library/PureCN/Meta/hsearch.rds
/usr/lib/R/site-library/PureCN/Meta/links.rds
/usr/lib/R/site-library/PureCN/Meta/nsInfo.rds
/usr/lib/R/site-library/PureCN/Meta/package.rds
/usr/lib/R/site-library/PureCN/Meta/vignette.rds
/usr/lib/R/site-library/PureCN/NAMESPACE
/usr/lib/R/site-library/PureCN/NEWS
/usr/lib/R/site-library/PureCN/R/PureCN
/usr/lib/R/site-library/PureCN/R/PureCN.rdb
/usr/lib/R/site-library/PureCN/R/PureCN.rdx
/usr/lib/R/site-library/PureCN/data/centromeres.rda
/usr/lib/R/site-library/PureCN/data/purecn.DNAcopy.bdry.rda
/usr/lib/R/site-library/PureCN/data/purecn.example.output.rda
/usr/lib/R/site-library/PureCN/doc/PureCN.R
/usr/lib/R/site-library/PureCN/doc/PureCN.Rnw
/usr/lib/R/site-library/PureCN/doc/PureCN.pdf
/usr/lib/R/site-library/PureCN/doc/Quick.R
/usr/lib/R/site-library/PureCN/doc/Quick.Rmd
/usr/lib/R/site-library/PureCN/doc/index.html
/usr/lib/R/site-library/PureCN/extdata/BenchmarkTumorOnly.R
/usr/lib/R/site-library/PureCN/extdata/Coverage.R
/usr/lib/R/site-library/PureCN/extdata/Dx.R
/usr/lib/R/site-library/PureCN/extdata/FilterCallableLoci.R
/usr/lib/R/site-library/PureCN/extdata/IntervalFile.R
/usr/lib/R/site-library/PureCN/extdata/NormalDB.R
/usr/lib/R/site-library/PureCN/extdata/PureCN.R
/usr/lib/R/site-library/PureCN/extdata/buggy_cnvkit.seg.gz
/usr/lib/R/site-library/PureCN/extdata/dist/calculateSbdry.R
/usr/lib/R/site-library/PureCN/extdata/dist/downloadCentromeres.R
/usr/lib/R/site-library/PureCN/extdata/ex1.bam
/usr/lib/R/site-library/PureCN/extdata/ex1.bam.bai
/usr/lib/R/site-library/PureCN/extdata/ex1_gcgene.txt
/usr/lib/R/site-library/PureCN/extdata/ex1_intervals.txt
/usr/lib/R/site-library/PureCN/extdata/ex2_intervals.bed
/usr/lib/R/site-library/PureCN/extdata/ex2_intervals.txt
/usr/lib/R/site-library/PureCN/extdata/ex2_mappability.bed
/usr/lib/R/site-library/PureCN/extdata/ex2_mappability.bigWig
/usr/lib/R/site-library/PureCN/extdata/ex2_reference.fa
/usr/lib/R/site-library/PureCN/extdata/ex2_reference.fa.fai
/usr/lib/R/site-library/PureCN/extdata/ex2_reptiming.bed
/usr/lib/R/site-library/PureCN/extdata/ex3_intervals.bed
/usr/lib/R/site-library/PureCN/extdata/ex3_mappability.bed
/usr/lib/R/site-library/PureCN/extdata/ex3_reference.fa
/usr/lib/R/site-library/PureCN/extdata/ex3_reference.fa.fai
/usr/lib/R/site-library/PureCN/extdata/example.vcf.gz
/usr/lib/R/site-library/PureCN/extdata/example_callable.bed.gz
/usr/lib/R/site-library/PureCN/extdata/example_cosmic.vcf.gz
/usr/lib/R/site-library/PureCN/extdata/example_cosmic.vcf.gz.tbi
/usr/lib/R/site-library/PureCN/extdata/example_gatk4_denoised_cr.tsv.gz
/usr/lib/R/site-library/PureCN/extdata/example_gatk4_modelfinal.seg.gz
/usr/lib/R/site-library/PureCN/extdata/example_intervals.txt
/usr/lib/R/site-library/PureCN/extdata/example_intervals_tiny.txt
/usr/lib/R/site-library/PureCN/extdata/example_logratio.txt.gz
/usr/lib/R/site-library/PureCN/extdata/example_mutect2.vcf.gz
/usr/lib/R/site-library/PureCN/extdata/example_mutect2.vcf.gz.tbi
/usr/lib/R/site-library/PureCN/extdata/example_normal.list
/usr/lib/R/site-library/PureCN/extdata/example_normal.txt
/usr/lib/R/site-library/PureCN/extdata/example_normal2.txt
/usr/lib/R/site-library/PureCN/extdata/example_normal3.cnn
/usr/lib/R/site-library/PureCN/extdata/example_normal4.cnr
/usr/lib/R/site-library/PureCN/extdata/example_normal5.hdf5
/usr/lib/R/site-library/PureCN/extdata/example_normal_tiny.txt
/usr/lib/R/site-library/PureCN/extdata/example_seg.txt
/usr/lib/R/site-library/PureCN/extdata/example_single.vcf.gz
/usr/lib/R/site-library/PureCN/extdata/example_single.vcf.gz.tbi
/usr/lib/R/site-library/PureCN/extdata/example_tumor.txt
/usr/lib/R/site-library/PureCN/extdata/example_tumor2.txt
/usr/lib/R/site-library/PureCN/extdata/example_tumor_tiny.txt
/usr/lib/R/site-library/PureCN/extdata/example_vcf.vcf.gz
/usr/lib/R/site-library/PureCN/extdata/example_vcf.vcf.gz.tbi
/usr/lib/R/site-library/PureCN/extdata/gatk4_pon_db.tgz
/usr/lib/R/site-library/PureCN/extdata/issue109.vcf.gz
/usr/lib/R/site-library/PureCN/extdata/issue62.vcf.gz
/usr/lib/R/site-library/PureCN/extdata/issue62.vcf.gz.tbi
/usr/lib/R/site-library/PureCN/extdata/normalpanel.vcf.gz
/usr/lib/R/site-library/PureCN/extdata/normalpanel.vcf.gz.tbi
/usr/lib/R/site-library/PureCN/extdata/test_coverage_overlapping_intervals.txt
/usr/lib/R/site-library/PureCN/help/AnIndex
/usr/lib/R/site-library/PureCN/help/PureCN.rdb
/usr/lib/R/site-library/PureCN/help/PureCN.rdx
/usr/lib/R/site-library/PureCN/help/aliases.rds
/usr/lib/R/site-library/PureCN/help/paths.rds
/usr/lib/R/site-library/PureCN/html/00Index.html
/usr/lib/R/site-library/PureCN/html/R.css
/usr/share/doc/r-bioc-purecn/changelog.Debian.gz
/usr/share/doc/r-bioc-purecn/copyright
/usr/share/doc/r-bioc-purecn/run-unit-test
/usr/share/doc/r-bioc-purecn/tests/testthat.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_annotateTargets.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_bootstrapResults.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_calculateBamCoverageByInterval.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_calculatePowerDetectSomatic.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_callAlterations.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_callAlterationsFromSegmentation.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_callAmplificationsInLowPurity.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_callCIN.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_callLOH.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_callMutationBurden.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_correctCoverageBias.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_createCurationFile.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_createNormalDatabase.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_filterVcf.R.gz
/usr/share/doc/r-bioc-purecn/tests/testthat/test_findFocal.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_getSexFromCoverage.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_getSexFromVcf.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_plotAbs.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_poolCoverage.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_predictSomatic.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_preprocessIntervals.R.gz
/usr/share/doc/r-bioc-purecn/tests/testthat/test_processMultipleSamples.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_readCoverageFile.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_readLogRatioFile.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_readSegmentationFile.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_runAbsoluteCN.R.gz
/usr/share/doc/r-bioc-purecn/tests/testthat/test_segmentation.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_setMappingBiasVcf.R
/usr/share/doc/r-bioc-purecn/tests/testthat/test_setPriorVcf.R