[ 原始碼： bbmap ]
套件：bbmap（38.90+dfsg-1）
short read aligner and other bioinformatic tools
BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels.
BBMap is multithreaded as well as the other tools bundled into this package for instance:
BBNorm: Kmer-based error-correction and normalization tool.
Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity.
Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s.
BBDuk: Filters, trims, or masks reads with kmer matches to an artifact/contaminant file.
其他與 bbmap 有關的套件
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- dep: libmpj-java
- Java library for parallel applications for multicore processors and clusters
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- rec: pigz
- Parallel Implementation of GZip