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[ 原始碼: python-pbcommand  ]

套件:python3-pbcommand(2.1.1+git20220616.3f2e6c2-2)

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common command-line interface for Pacific Biosciences analysis modules

To integrate with the pbsmrtpipe workflow engine, one must to be able to generate a Tool Contract and to be able to run from a Resolved Tool Contract. A Tool Contract contains the metadata of the exe, such as the file types of inputs, outputs and options. There are two principal use cases, first wrapping/calling Python functions that have been defined in external Python 3 packages, or scripts. Second, creating a CLI tool that supports emitting tool contracts, running resolved tool contracts and complete argparse-style CLI.

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