[ 原始碼： r-cran-alakazam ]
套件：r-cran-alakazam（1.2.1-1）
r-cran-alakazam 的相關連結
Debian 的資源：
下載原始碼套件 r-cran-alakazam：
- [r-cran-alakazam_1.2.1-1.dsc]
- [r-cran-alakazam_1.2.1.orig.tar.gz]
- [r-cran-alakazam_1.2.1-1.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [cran.r-project.org]
相似套件：
Immunoglobulin Clonal Lineage and Diversity Analysis
Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.
Alakazam serves five main purposes:
* Providing core functionality for other R packages in the Immcantation framework. This includes common tasks such as file I/O, basic DNA sequence manipulation, and interacting with V(D)J segment and gene annotations. * Providing an R interface for interacting with the output of the pRESTO and Change-O tool suites. * Performing lineage reconstruction on clonal populations of Ig sequences and analyzing the topology of the resultant lineage trees. * Performing clonal abundance and diversity analysis on lymphocyte repertoires. * Performing physicochemical property analyses of lymphocyte receptor sequences.
其他與 r-cran-alakazam 有關的套件
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- dep: libc6 (>= 2.4)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: r-api-4.0
- 本虛擬套件由這些套件填實： r-base-core
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- dep: r-base-core (>= 4.2.1-2)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-biostrings (>= 2.56.0)
- GNU R string objects representing biological sequences
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- dep: r-bioc-genomicalignments (>= 1.24.0)
- BioConductor representation and manipulation of short genomic alignments
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- dep: r-bioc-iranges (>= 2.22.2)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-cran-airr (>= 1.3)
- GNU R AIRR data representation reference library
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- dep: r-cran-ape
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- dep: r-cran-dplyr (>= 1.0)
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- dep: r-cran-ggplot2 (>= 3.3.4)
- implementation of the Grammar of Graphics
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- dep: r-cran-igraph (>= 1.0)
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- dep: r-cran-matrix (>= 1.3-0)
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- dep: r-cran-progress
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- dep: r-cran-rcpp (>= 0.12.12)
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- dep: r-cran-readr
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- dep: r-cran-stringi
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- dep: r-cran-tibble
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- dep: r-cran-tidyr (>= 1.0)
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-rmarkdown
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- sug: r-cran-testthat
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