[ 原始碼： r-bioc-tfbstools ]
套件：r-bioc-tfbstools（1.36.0+dfsg-2）
r-bioc-tfbstools 的相關連結
Debian 的資源：
下載原始碼套件 r-bioc-tfbstools：
- [r-bioc-tfbstools_1.36.0+dfsg-2.dsc]
- [r-bioc-tfbstools_1.36.0+dfsg.orig.tar.xz]
- [r-bioc-tfbstools_1.36.0+dfsg-2.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [bioconductor.org]
相似套件：
GNU R Transcription Factor Binding Site (TFBS) Analysis
TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.
其他與 r-bioc-tfbstools 有關的套件
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- dep: libc6 (>= 2.4)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: r-api-4.0
- 本虛擬套件由這些套件填實： r-base-core
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- dep: r-api-bioc-3.16
- 本虛擬套件由這些套件填實： r-bioc-biocgenerics
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- dep: r-base-core (>= 4.2.2.20221110-1)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-biobase (>= 2.28)
- base functions for Bioconductor
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- dep: r-bioc-biocgenerics (>= 0.14.0)
- generic functions for Bioconductor
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- dep: r-bioc-biocparallel (>= 1.2.21)
- BioConductor facilities for parallel evaluation
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- dep: r-bioc-biostrings (>= 2.36.4)
- GNU R string objects representing biological sequences
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- dep: r-bioc-bsgenome (>= 1.36.3)
- BioConductor infrastructure for Biostrings-based genome data packages
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- dep: r-bioc-cner (>= 1.4.0)
- CNE Detection and Visualization
-
- dep: r-bioc-dirichletmultinomial (>= 1.10.0)
- Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
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- dep: r-bioc-genomeinfodb (>= 1.6.1)
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicranges (>= 1.20.6)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.2.7)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rtracklayer (>= 1.28.10)
- GNU R interface to genome browsers and their annotation tracks
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- dep: r-bioc-s4vectors (>= 0.9.25)
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-seqlogo (>= 1.34.0)
- GNU R sequence logos for DNA sequence alignments
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- dep: r-bioc-xvector (>= 0.8.0)
- BioConductor representation and manpulation of external sequences
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- dep: r-cran-catools (>= 1.17.1)
- GNU R package providing various utility functions
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- dep: r-cran-dbi (>= 0.6)
- GNU R package providing a generic database interface
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- dep: r-cran-gtools (>= 3.5.0)
- GNU R package with R programming tools by Greg Warnes et al
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- dep: r-cran-rsqlite (>= 1.0.0)
- Database Interface R driver for SQLite
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- dep: r-cran-tfmpvalue (>= 0.0.5)
- GNU R P-Value Computation for Position Weight Matrices
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- dep: r-cran-xml (>= 3.98-1.3)
- GNU R package for XML parsing and generation
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- sug: r-bioc-biocstyle (>= 1.7.7)
- standard styles for vignettes and other Bioconductor documents
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- sug: r-cran-knitr (>= 1.11)
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-testthat
- GNU R testsuite