套件：bowtie2（2.5.0-3 以及其他的）

[ 原始碼： bowtie2  ]

ultrafast memory-efficient short read aligner

is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.

Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes

標籤: 生物學: 核酸, 領域: 生物學, field::biology:bioinformatics, implemented-in::c++, 使用者介面: 命令行, 角色: role::program, use::comparing, 處理: Biological Sequence

其他與 bowtie2 有關的套件

• dep: libc6 (>= 2.34)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC 支援函式庫

• dep: libstdc++6 (>= 12)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.2.6)

  壓縮函式庫 - 跑程式時用(runtime)

• sug: bowtie2-examples

  Examples for bowtie2

下載 bowtie2

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
mips64el	2.5.0-3+b2	1，376。2 kB	6，059。0 kB	[檔案列表]