[ 原始碼： pairtools ]
套件：python3-pairtools（1.0.2-2 以及其他的）
Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C experiment.
Process pair-end sequence alignments and perform the following operations:
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
其他與 python3-pairtools 有關的套件
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- dep: cython3
- C-Extensions for Python 3
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- dep: libc6 (>= 2.4)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.12)
- dep: python3 (>= 3.11~)
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- dep: python3-bioframe
- library to enable flexible, scalable operations on genomic interval dataframes
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- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
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- dep: python3-numpy (>= 1:1.22.0)
- Fast array facility to the Python 3 language
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- dep: python3-numpy-abi9
- 本虛擬套件由這些套件填實： python3-numpy
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
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- dep: python3-pysam (>= 0.20.0+ds-3~)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- sug: python3-pairtools-examples (>= 1.0.2)
- Process sequencing data from a Hi-C experiment (examples)