套件：wise（2.4.1-23）
wise 的相關連結
Debian 的資源：
下載原始碼套件 wise：
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Steffen Moeller (QA 頁面)
- Charles Plessy (QA 頁面)
- Andreas Tille (QA 頁面)
外部的資源：
- 主頁 [www.ebi.ac.uk]
相似套件：
comparison of biopolymers, like DNA and protein sequences
Wise2 is a package focused on comparisons of biopolymers, commonly DNA and protein sequences. There are many other packages which do this, probably the best known being BLAST package (from NCBI) and the Fasta package (from Bill Pearson). There are other packages, such as the HMMER package (Sean Eddy) or SAM package (UC Santa Cruz) focused on hidden Markov models (HMMs) of biopolymers.
Wise2's particular forte is the comparison of DNA sequence at the level of its protein translation. This comparison allows the simultaneous prediction of say gene structure with homology based alignment.
Wise2 also contains other algorithms, such as the venerable Smith-Waterman algorithm, or more modern ones such as Stephen Altschul's generalised gap penalties, or even experimental ones developed in house, such as dba. The development of these algorithms is due to the ease of developing such algorithms in the environment used by Wise2.
Wise2 has also been written with an eye for reuse and maintainability. Although it is a pure C package you can access its functionality directly in Perl. Parts of the package (or the entire package) can be used by other C or C++ programs without namespace clashes as all externally linked variables have the unique identifier Wise2 prepended.
其他與 wise 有關的套件
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- dep: libc6 (>= 2.29)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libglib2.0-0 (>= 2.12.0)
- GLib library of C routines
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- dep: wise-data (= 2.4.1-23)
- data files for the wise package
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- sug: wise-doc (= 2.4.1-23)
- documentation for the wise package