套件：ssake（4.0.1-1）

[ 原始碼： ssake  ]

genomics application for assembling millions of very short DNA sequences

The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.

標籤: 領域: 生物學, 實做語言: Perl, implemented-in::python, interface::commandline, 使用者介面: Command Shell, 角色: role::program, scope::utility, Purpose: Analysing

其他與 ssake 有關的套件

• dep: libperl4-corelibs-perl

  libraries historically supplied with Perl 4

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• sug: ssake-examples

  example data for SSAKE, a genomic assembler of short reads

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硬體架構	套件大小	安裝後大小	檔案
all	48。9 kB	214。0 kB	[檔案列表]