[ 原始碼： r-bioc-dada2 ]
套件：r-bioc-dada2（1.26.0+dfsg-1）
r-bioc-dada2 的相關連結
Debian 的資源：
下載原始碼套件 r-bioc-dada2：
- [r-bioc-dada2_1.26.0+dfsg-1.dsc]
- [r-bioc-dada2_1.26.0+dfsg.orig.tar.xz]
- [r-bioc-dada2_1.26.0+dfsg-1.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [bioconductor.org]
相似套件：
sample inference from amplicon sequencing data
The dada2 package contributes to software workflows to interpret sequencing data from microbiota - the relative abundance of bacterial and/or yeast, typically measured in the gut. It infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.
其他與 r-bioc-dada2 有關的套件
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- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: r-api-4.0
- 本虛擬套件由這些套件填實： r-base-core
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- dep: r-api-bioc-3.16
- 本虛擬套件由這些套件填實： r-bioc-biocgenerics
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- dep: r-base-core (>= 4.2.2.20221110-1)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-biocgenerics (>= 0.22.0)
- generic functions for Bioconductor
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- dep: r-bioc-biostrings (>= 2.42.1)
- GNU R string objects representing biological sequences
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- dep: r-bioc-iranges (>= 2.6.0)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-shortread (>= 1.32.0)
- GNU R classes and methods for high-throughput short-read sequencing data
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- dep: r-bioc-xvector (>= 0.16.0)
- BioConductor representation and manpulation of external sequences
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- dep: r-cran-ggplot2 (>= 2.1.0)
- implementation of the Grammar of Graphics
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- dep: r-cran-rcpp (>= 0.12.0)
- GNU R package for Seamless R and C++ Integration
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- dep: r-cran-rcppparallel (>= 4.3.0)
- parallel programming tools for Rcpp
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- dep: r-cran-reshape2 (>= 1.4.1)
- Flexibly reshape data: a reboot of the reshape package
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats