[ 原始碼： python-nanoget ]
套件：python3-nanoget-examples（1.16.1-2）
python3-nanoget-examples 的相關連結
Debian 的資源：
下載原始碼套件 python-nanoget：
- [python-nanoget_1.16.1-2.dsc]
- [python-nanoget_1.16.1.orig.tar.gz]
- [python-nanoget_1.16.1-2.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [github.com]
相似套件：
example data for python3-nanoget (dealing with Oxford Nanopore data)
The Python3 module nanoget provides functions to extract useful metrics from Oxford Nanopore sequencing reads and alignments.
Data can be presented in the following formats, using the following functions:
* sorted bam file process_bam(bamfile, threads) * standard fastq file process_fastq_plain(fastqfile, 'threads') * fastq file with metadata from MinKNOW or Albacore process_fastq_rich(fastqfile) * sequencing_summary file generated by Albacore process_summary(sequencing_summary.txt, 'readtype')
Fastq files can be compressed using gzip, bzip2 or bgzip. The data is returned as a pandas DataFrame with standardized headernames for convenient extraction. The functions perform logging while being called and extracting data.
This package just contains an example script and the data to run the example.
其他與 python3-nanoget-examples 有關的套件
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- enh: python3-nanoget
- extract information from Oxford Nanopore sequencing data and alignments