[ 源代码： nanook ]
软件包：nanook（1.33+dfsg-5）
pre- and post-alignment analysis of nanopore sequencing data
NanoOK is a flexible, multi-reference software for pre- and post- alignment analysis of nanopore sequencing data, quality and error profiles.
NanoOK (pronounced na-nook) is a tool for extraction, alignment and analysis of Nanopore reads. NanoOK will extract reads as FASTA or FASTQ files, align them (with a choice of alignment tools), then generate a comprehensive multi-page PDF report containing yield, accuracy and quality analysis. Along the way, it generates plain text files which can be used for further analysis, as well as graphs suitable for inclusion in presentations and papers.
其他与 nanook 有关的软件包
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- dep: default-jre-headless
- Standard Java or Java compatible Runtime (headless)
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- dep: hdf5-tools
- HDF5 - Runtime tools
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- dep: last-align
- genome-scale comparison of biological sequences
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- dep: libcommons-io-java
- Common useful IO related classes
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- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- dep: r-cran-gridextra
- GNU R package with extensions for the grid package
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- dep: r-cran-reshape
- Flexibly reshape data
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- dep: r-cran-scales
- Scale functions for visualization
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- dep: texlive-latex-base
- TeX Live: LaTeX fundamental packages
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- rec: blasr
- 软件包暂时不可用
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- rec: bwa
- Burrows-Wheeler Aligner
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- sug: default-jre
- Standard Java or Java compatible Runtime