[ 源代码： r-bioc-ggbio ]
软件包：r-bioc-ggbio（1.52.0-1）
Visualization tools for genomic data
The ggbio package extends and specializes the grammar of graphics for biological data. The graphics are designed to answer common scientific questions, in particular those often asked of high throughput genomics data. All core Bioconductor data structures are supported, where appropriate. The package supports detailed views of particular genomic regions, as well as genome-wide overviews. Supported overviews include ideograms and grand linear views. High-level plots include sequence fragment length, edge-linked interval to data view, mismatch pileup, and several splicing summaries.
其他与 r-bioc-ggbio 有关的软件包
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- dep: r-api-4.0
- 本虚包由这些包填实： r-base-core
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- dep: r-api-bioc-3.19
- 本虚包由这些包填实： r-bioc-biocgenerics
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- dep: r-bioc-annotationdbi (>= 1.66.0)
- GNU R Annotation Database Interface for BioConductor
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- dep: r-bioc-annotationfilter (>= 1.28.0)
- facilities for filtering Bioconductor annotation resources
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- dep: r-bioc-biobase (>= 2.64.0)
- base functions for Bioconductor
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- dep: r-bioc-biocgenerics (>= 0.50.0)
- generic functions for Bioconductor
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- dep: r-bioc-biostrings (>= 2.72.1)
- GNU R string objects representing biological sequences
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- dep: r-bioc-biovizbase (>= 1.52.0)
- GNU R basic graphic utilities for visualization of genomic data
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- dep: r-bioc-bsgenome (>= 1.72.0)
- BioConductor infrastructure for Biostrings-based genome data packages
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- dep: r-bioc-ensembldb (>= 2.28.0)
- GNU R utilities to create and use an Ensembl based annotation database
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- dep: r-bioc-genomeinfodb (>= 1.40.1)
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicalignments (>= 1.40.0)
- BioConductor representation and manipulation of short genomic alignments
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- dep: r-bioc-genomicfeatures (>= 1.56.0)
- GNU R tools for making and manipulating transcript centric annotations
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- dep: r-bioc-genomicranges (>= 1.56.1)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.38.1)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-organismdbi (>= 1.46.0)
- smooth interfacing of different database packages
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- dep: r-bioc-rsamtools (>= 2.20.0)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-bioc-rtracklayer (>= 1.64.0)
- GNU R interface to genome browsers and their annotation tracks
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- dep: r-bioc-s4vectors (>= 0.42.1)
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-summarizedexperiment (>= 1.34.0)
- BioConductor assay container
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- dep: r-bioc-variantannotation (>= 1.50.0)
- BioConductor annotation of genetic variants
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- dep: r-cran-ggally
- GNU R extension to r-cran-ggplot2
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- dep: r-cran-ggplot2 (>= 1.0.0)
- implementation of the Grammar of Graphics
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- dep: r-cran-gridextra
- GNU R package with extensions for the grid package
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- dep: r-cran-gtable
- Arrange grobs in tables
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- dep: r-cran-hmisc
- GNU R miscellaneous functions by Frank Harrell
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- dep: r-cran-reshape2
- Flexibly reshape data: a reboot of the reshape package
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- dep: r-cran-rlang
- Functions for Base Types and Core R and 'Tidyverse' Features
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- dep: r-cran-scales
- Scale functions for visualization
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- sug: r-bioc-biocstyle (>= 2.32.1)
- standard styles for vignettes and other Bioconductor documents
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-testthat
- GNU R testsuite
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- sug: r-cran-tinytex
- GNU R helper to compile LaTeX documents