软件包：pscan-chip（1.1-3 以及其他的）

[ 源代码： pscan-chip  ]

ChIP-based identifcation of TF binding sites

Regulation of transcription is one of the main check points of gene expression regulation and plays a key role in fundamental processes like cellular differentiation and dynamic molecular responses to stimuli The transcriptional activity of genes is finely regulated by the interaction of sequence elements on the DNA (transcription factor binding sites or TFBSs) and particular proteins called Transcription Factors (TFs).

TFBSs are usually clustered in specific regulatory genomic regions called promoters and enhancers. TFs usually recognize TFBSs in a loose sequence specific fashion but there is no computational way to determine if any given sequence motif on the DNA is actually bound in-vivo by a TF, even when the motif is an istance of the sequences typically bound by the TF itself.

Tools like Pscan and PscanChIP analyse a set of regulatory sequences to detect motif enrichment. The rationale is that if a given TFBS is present in a "surpisingly high" number of istances then there is a good chance that the TF that recognize that motif is a common regulator of the input sequences, thus they use redundancy as an information source.

While Pscan (of the pscan-tfbs package) is tailored to work on promoters, that is the regulatory regions upstream of transcription start sites, PscanChIP is suited to work on more general regulatory genomic regions like the ones identified through ChIP-Seq experiments.

其他与 pscan-chip 有关的软件包

• dep: libc6 (>= 2.38)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

  GCC 支持库

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgsl28 (>= 2.8+dfsg)

  GNU Scientific Library (GSL) -- library package

• dep: libstdc++6 (>= 13.1)

  GNU 标准 C++ 库，第3版

• rec: pscan-chip-data

  auxiliary data for PScan-ChIP

• sug: pscan-tfbs

  search for transcription factor binding sites

下载 pscan-chip

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	1.1-3+b3	87.3 kB	197.0 kB	[文件列表]
arm64	1.1-3+b3	81.4 kB	249.0 kB	[文件列表]
armel	1.1-3+b3	81.1 kB	167.0 kB	[文件列表]
armhf	1.1-3+b3	80.1 kB	139.0 kB	[文件列表]
i386	1.1-3+b3	90.6 kB	199.0 kB	[文件列表]
mips64el	1.1-3+b3	84.6 kB	256.0 kB	[文件列表]
ppc64el	1.1-3+b3	87.4 kB	249.0 kB	[文件列表]
riscv64	1.1-3+b2	83.9 kB	153.0 kB	[文件列表]
s390x	1.1-3+b3	85.7 kB	185.0 kB	[文件列表]