软件包：pirs（2.0.2+dfsg-12）
Profile based Illumina pair-end Reads Simulator
The program pIRS can be used for simulating Illumina PE reads, with a series of characters generated by Illumina sequencing platform, such as insert size distribution, sequencing error(substitution, insertion, deletion), quality score and GC content-coverage bias.
The insert size follows a normal distribution, so users should set the mean value and standard deviation. Usually the standard deviation is set as 1/20 of the mean value. The normal distribution by Box-Muller method is simulated.
The program simulates sequencing error, quality score and GC content- coverage bias according to the empirical distribution profile. Some default profiles counted from lots of real sequencing data are provided.
To simulate reads from diploid genome, users should simulate the diploid genome sequence firstly by setting the ratio of heterozygosis SNP, heterozygosis InDel and structure variation.
其他与 pirs 有关的软件包
|
|
|
|
-
- dep: fonts-liberation
- fonts with the same metrics as Times, Arial and Courier
-
- dep: gnuplot-qt
- Command-line driven interactive plotting program. QT-package
- 或者 gnuplot
- Command-line driven interactive plotting program.
同时作为一个虚包由这些包填实： gnuplot-nox, gnuplot-qt, gnuplot-x11
-
- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC 支持库
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP（GOMP）支持库
-
- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
-
- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
-
- dep: pirs-profiles
- profile basd Illumina pair-end Reads Simulator (profile data)
-
- dep: zlib1g (>= 1:1.2.0.2)
- 压缩库 - 运行时