软件包：abpoa（1.5.3-1 以及其他的）
adaptive banded Partial Order Alignment
abPOA is an extended version of Partial Order Alignment (POA) that performs adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA can perform multiple sequence alignment (MSA) on a set of input sequences and generate a consensus sequence by applying the heaviest bundling algorithm to the final alignment graph.
abPOA can generate high-quality consensus sequences from error-prone long reads and offer significant speed improvement over existing tools.
abPOA supports three alignment modes (global, local, extension) and flexible scoring schemes that allow linear, affine and convex gap penalties. It right now supports SSE2/SSE4.1/AVX2 vectorization.
For more information please refer to the paper[1] published in Bioinformatics.
其他与 abpoa 有关的软件包
|
|
|
|
-
- dep: graphviz
- rich set of graph drawing tools
-
- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时