全部搜索项
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ 源代码: kraken  ]

软件包:kraken(1.1.1-4)

kraken 的相关链接

Screenshot

Debian 的资源:

下载源码包 kraken

维护小组:

外部的资源:

相似软件包:

assigning taxonomic labels to short DNA sequences

Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.

In its fastest mode of operation, for a simulated metagenome of 100 bp reads, Kraken processed over 4 million reads per minute on a single core, over 900 times faster than Megablast and over 11 times faster than the abundance estimation program MetaPhlAn. Kraken's accuracy is comparable with Megablast, with slightly lower sensitivity and very high precision.

其他与 kraken 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • 增强

下载 kraken

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
mips64el 736.3 kB1,789.0 kB [文件列表]