软件包：ncbi-epcr（2.3.12-1-10）

[ 源代码： epcr  ]

Tool to test a DNA sequence for the presence of sequence tagged sites

Electronic PCR (e-PCR) is computational procedure that is used to identify sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential STSs in DNA sequences by searching for subsequences that closely match the PCR primers and have the correct order, orientation, and spacing that could represent the PCR primers used to generate known STSs.

The new version of e-PCR implements a fuzzy matching strategy. To reduce likelihood that a true STS will be missed due to mismatches, multiple discontiguous words may be used instead of a single exact word. Each of this word has groups of significant positions separated by 'wildcard' positions that are not required to match. In addition, it is also possible to allow gaps in the primer alignments.

The main motivation for implementing reverse searching (called Reverse e-PCR) was to make it feasible to search the human genome sequence and other large genomes. The new version of e-PCR provides a search mode using a query sequence against a sequence database.

This program is retired upstream and it is suggested to use Primer-Blast

 https://www.ncbi.nlm.nih.gov/tools/primer-blast/

instead.

标签: 领域: 生物学, 生物信息学, 实做语言: implemented-in::c++, interface::commandline, 角色: 程序, 范围: 实用程序, Purpose: use::checking, use::searching, 支持的格式: 纯文本, 处理: 需要一个额外的标签

其他与 ncbi-epcr 有关的软件包

• dep: libc6 (>= 2.38)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.5)

  GCC 支持库

• dep: libstdc++6 (>= 13.1)

  GNU 标准 C++ 库，第3版

• sug: bioperl

  用于处理计算分子生物学的 Perl 工具

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硬件架构	软件包大小	安装后大小	文件
armhf	149.4 kB	350.0 kB	[文件列表]