软件包：ssake（4.0.1-2）

[ 源代码： ssake  ]

genomics application for assembling millions of very short DNA sequences

The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.

标签: 领域: 生物学, 实做语言: Perl, implemented-in::python, interface::commandline, 用户接口: Command Shell, 角色: role::program, scope::utility, Purpose: Analysing

其他与 ssake 有关的软件包

• dep: libperl4-corelibs-perl

  libraries historically supplied with Perl 4

• dep: perl

  拉里 沃尔的实用报表提取语言(Perl)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• sug: ssake-examples

  example data for SSAKE, a genomic assembler of short reads

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硬件架构	软件包大小	安装后大小	文件
all	47.6 kB	215.0 kB	[文件列表]