[ 源代码： qcumber ]
软件包：qcumber（2.3.0-2）
quality control of genomic sequences
QCPipeline is a tool for quality control. The workflow is as follows:
1. Quality control with FastQC 2. Trim Reads with Trimmomatic 3. Quality control of trimmed reads with FastQC 4. Map reads against reference using bowtie2 5. Classify reads with Kraken
其他与 qcumber 有关的软件包
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- dep: debconf (>= 0.5)
- Debian 配置管理系统
- 或者 debconf-2.0
- 本虚包由这些包填实： cdebconf, cdebconf-udeb, debconf
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- dep: libjs-angularjs
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- dep: libjs-d3
- JavaScript visualization library for HTML and SVG
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- dep: libjs-jquery
- JavaScript library for dynamic web applications
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-jinja2
- small but fast and easy to use stand-alone template engine
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
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- dep: r-base-core
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-savr
- GNU R parse and analyze Illumina SAV files
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- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- dep: r-cran-quantreg
- GNU R package for quantile regression
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- dep: snakemake
- pythonic workflow management system