[ 源代码： jellyfish ]
软件包：jellyfish（2.3.1-4）
jellyfish 的相关链接
Debian 的资源：
下载源码包 jellyfish：
维护小组：
- Debian Med Packaging Team (QA 页面, 邮件存档)
- Shaun Jackman (QA 页面)
- Andreas Tille (QA 页面)
- Michael R. Crusoe (QA 页面)
- Étienne Mollier (QA 页面)
外部的资源：
- 主页 [www.genome.umd.edu]
相似软件包：
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
其他与 jellyfish 有关的软件包
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- dep: libc6 (>= 2.38)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 支持库
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libjellyfish-2.0-2 (= 2.3.1-4)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 14)
- GNU 标准 C++ 库，第3版