软件包：mummer（3.23+dfsg-8）

[ 源代码： mummer  ]

Efficient sequence alignment of full genomes

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

标签: 领域: 生物学, 生物信息学, 实做语言: implemented-in::c++, interface::commandline, 角色: 程序, 范围: 实用程序, Purpose: use::comparing, works-with-format::TODO, 支持的格式: 纯文本, 处理: 需要一个额外的标签

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• dep: gawk

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• dep: libc6 (>= 2.34)

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  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC 支持库

• dep: libstdc++6 (>= 11)

  GNU 标准 C++ 库，第3版

• dep: perl

  拉里 沃尔的实用报表提取语言(Perl)

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硬件架构	软件包大小	安装后大小	文件
amd64	646.2 kB	3,307.0 kB	[文件列表]