软件包：stringtie（2.2.1+ds-3 以及其他的） [debports]
assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.
StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.
其他与 stringtie 有关的软件包
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- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.4)
- GCC 支持库
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 4.1.1)
- GNU 标准 C++ 库，第3版
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
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- rec: stringtie-examples
- 软件包暂时不可用
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- sug: cufflinks
- Transcript assembly, differential expression and regulation for RNA-Seq