软件包：pizzly（0.37.3+ds-9） [debports]
Identifies gene fusions in RNA sequencing data
For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.
Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.
其他与 pizzly 有关的软件包
|
|
|
|
-
- dep: kallisto
- near-optimal RNA-Seq quantification
-
- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: libgcc-s1 (>= 4.3)
- GCC 支持库
-
- dep: libstdc++6 (>= 12.2.0-12)
- GNU 标准 C++ 库，第3版
-
- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
-
- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时
-
- rec: python3-h5py
- general-purpose Python interface to hdf5