软件包：barrnap（0.9+dfsg-4）

[ 源代码： barrnap  ]

rapid ribosomal RNA prediction

Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).

It takes FASTA DNA sequence as input, and writes GFF3 as output. It uses the NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.

标签: 领域: 生物学, 生物信息学, 实做语言: implemented-in::perl, interface::commandline, 角色: 程序, Purpose: use::searching, works-with::biological-sequence

其他与 barrnap 有关的软件包

• dep: bedtools

  suite of utilities for comparing genomic features

• dep: hmmer

  profile hidden Markov models for protein sequence analysis

• dep: perl

  拉里 沃尔的实用报表提取语言(Perl)

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硬件架构	软件包大小	安装后大小	文件
all	513.6 kB	3,170.0 kB	[文件列表]