软件包：muscle（1:5.1.0-1）
muscle 的相关链接
Debian 的资源：
下载源码包 muscle：
维护小组：
- Debian Med Packaging Team (QA 页面, 邮件存档)
- Steffen Moeller (QA 页面)
- Charles Plessy (QA 页面)
- Andreas Tille (QA 页面)
外部的资源：
- 主页 [www.drive5.com]
相似软件包：
Multiple alignment program of protein sequences
MUSCLE is a multiple alignment program for protein sequences. MUSCLE stands for multiple sequence comparison by log-expectation. In the authors tests, MUSCLE achieved the highest scores of all tested programs on several alignment accuracy benchmarks, and is also one of the fastest programs out there.
Muscle v5 is a major re-write of MUSCLE based on new algorithms.
Users should be aware that command line arguments compared to version 3.x of MUSCLE have changed!
Highest accuracy, scalable to thousands of sequences
Compared to previous versions, Muscle v5 is much more accurate, is often faster, and scales to much larger datasets. At the time of writing (late 2021), Muscle v5 has the highest scores on multiple alignment benchmarks including Balibase, Bralibase, Prefab and Balifam. It can align tens of thousands of sequences with high accuracy on a low-cost commodity computer (say, an 8-core Intel CPU with 32 Gb RAM). On large datasets, Muscle v5 is 20-30% more accurate than MAFFT and Clustal-Omega.
Alignment ensembles
Muscle v5 can generate ensembles of high-accuracy alternative alignments. All replicates have equal average accuracy on benchmark test, including the MSA made with default parameters. By comparing results of downstream analysis (trees, structure prediction...) on different replicates, you can assess the effects of alignment errors on your study.
其他与 muscle 有关的软件包
|
|
|
|
-
- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC 支持库
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP（GOMP）支持库
-
- dep: libstdc++6 (>= 11)
- GNU 标准 C++ 库，第3版