软件包：mapsembler2（2.1.6+dfsg-1） [debports]
bioinformatics targeted assembly software
Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters).
It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice.
Mapsembler2 may be used for (not limited to):
- Validate an assembled sequence (input as starter), e.g. from a de Bruijn graph assembly where read-coherence was not enforced. - Checks if a gene (input as starter) has an homolog in a set of reads - Checks if a known enzyme is present in a metagenomic NGS read set. - Enrich unmappable reads by extending them, possibly making them mappable - Checks what happens at the extremities of a contig - Remove contaminants or symbiont reads from a read set
其他与 mapsembler2 有关的软件包
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- dep: bc
- GNU bc 任意精度的计算语言
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- dep: libc6 (>= 2.4)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc2 (>= 4.2.1)
- 软件包暂时不可用
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- dep: libstdc++6 (>= 4.4.0)
- GNU 标准 C++ 库，第3版
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- dep: zlib1g (>= 1:1.2.3.4)
- 压缩库 - 运行时