软件包：topp（2.6.0+cleaned1-4） [debports]
set of programs implementing The OpenMS Proteomic Pipeline
TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis of HPLC/MS data. It consists of a set of numerous small applications that can be chained together to create analysis pipelines tailored for a specific problem. The applications make use of the libopenms library. Some examples of these applications are :
- TOPPView: A viewer for mass spectrometry data.
- TOPPAS: An assistant for GUI-driven TOPP workflow design.
- DTAExtractor: Extracts spectra of an MS run file to several
files in DTA format.
- FileConverter: Converts between different MS file formats.
- FileFilter: Extracts or manipulates portions of data from peak,
feature or consensus feature files.
- SpectraMerger: Merges spectra from an LC/MS map, either by
precursor or by RT blocks.
- BaselineFilter: Removes the baseline from profile spectra using a
top-hat filter.
- InternalCalibration: Applies an internal calibration.
- PTModel: Trains a model for the prediction of proteotypic
peptides from a training set.
- RTPredict: Predicts retention times for peptides using a model
trained by RTModel.
- ExecutePipeline: Executes workflows created by TOPPAS.
其他与 topp 有关的软件包
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- dep: libc6.1 (>= 2.37)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6.1-udeb
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- dep: libgcc-s1 (>= 4.2)
- GCC 支持库
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- dep: libgomp1 (>= 6)
- GCC OpenMP（GOMP）支持库
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- dep: libopenms2.6.0 (= 2.6.0+cleaned1-4)
- library for LC/MS data management and analysis - runtime
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- dep: libqt5core5a (>= 5.11.3)
- Qt 5 核心模块
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- dep: libqt5gui5 (>= 5.11.3)
- Qt 5 GUI module
- 或者 libqt5gui5-gles (>= 5.11.3)
- Qt 5 GUI module — OpenGL ES variant
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- dep: libqt5widgets5 (>= 5.11.3)
- Qt 5 widgets 模块
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- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
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- dep: libunwind8
- library to determine the call-chain of a program - runtime
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- dep: libxerces-c3.2
- validating XML parser library for C++
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- dep: openms-common (= 2.6.0+cleaned1-4)
- package for LC/MS data management and analysis - shared data
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- sug: openms-doc
- package for LC/MS data management and analysis - documentation