软件包：python3-dna-jellyfish（2.3.0-12） [debports]
count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Python bindings of jellyfish.
其他与 python3-dna-jellyfish 有关的软件包
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- dep: libc6.1 (>= 2.31)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6.1-udeb
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- dep: libgcc-s1 (>= 4.2)
- GCC 支持库
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- dep: libjellyfish-2.0-2 (>= 2.3.0)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 9)
- GNU 标准 C++ 库，第3版
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- dep: libunwind8
- library to determine the call-chain of a program - runtime
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
- dep: python3 (<< 3.10)
- dep: python3 (>= 3.9~)