[ 源代码: prokka ]
软件包:prokka(1.14.6+dfsg-6)
rapid annotation of prokaryotic genomes
A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA.
其他与 prokka 有关的软件包
|
|
|
|
-
- dep: aragorn
- tRNA and tmRNA detection in nucleotide sequences
-
- dep: default-jre
- Standard Java or Java compatible Runtime
-
- dep: hmmer
- profile hidden Markov models for protein sequence analysis
-
- dep: infernal
- inference of RNA secondary structural alignments
-
- dep: less
- 分页程序,类似 more
-
- dep: libbio-perl-perl
- BioPerl core perl modules
-
- dep: libbio-searchio-hmmer-perl
- perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)
-
- dep: libswiss-perl
- Perl API to the UniProt database
-
- dep: libxml-simple-perl
- Perl module for reading and writing XML
-
- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
-
- dep: ncbi-tools-bin
- NCBI libraries for biology applications (text-based utilities)
-
- dep: parallel
- build and execute command lines from standard input in parallel
-
- dep: perl
- 拉里 沃尔的实用报表提取语言(Perl)
-
- dep: prodigal
- Microbial (bacterial and archaeal) gene finding program