软件包：glam2（1064-9） [debports]
gapped protein motifs from unaligned sequences
GLAM2 is a software package for finding motifs in sequences, typically amino-acid or nucleotide sequences. A motif is a re-occurring sequence pattern: typical examples are the TATA box and the CAAX prenylation motif. The main innovation of GLAM2 is that it allows insertions and deletions in motifs.
This package includes programs for discovering motifs shared by a set of sequences and finding matches to these motifs in a sequence database, as well as utilities for converting glam2 motifs to standard alignment formats, masking glam2 motifs out of sequences so that weaker motifs can be found, and removing highly similar members of a set of sequences.
The package includes these programs:
glam2: discovering motifs shared by a set of sequences;
glam2scan: finding matches, in a sequence database, to a motif discovered
by glam2;
glam2format: converting glam2 motifs to standard alignment formats;
glam2mask: masking glam2 motifs out of sequences, so that weaker motifs
can be found;
glam2-purge: removing highly similar members of a set of sequences.
In this binary package, the fast Fourier algorithm (FFT) was enabled for the glam2 program.
其他与 glam2 有关的软件包
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- dep: libc6.1 (>= 2.31)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6.1-udeb
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- dep: libfftw3-double3 (>= 3.3.5)
- Library for computing Fast Fourier Transforms - Double precision