软件包:last-align(1542-1 以及其他的)
last-align 的相关链接
Debian 的资源:
下载源码包 last-align:
维护小组:
- Debian Med Packaging Team (QA 页面, 邮件存档)
- Charles Plessy (QA 页面)
- Andreas Tille (QA 页面)
- Nilesh Patra (QA 页面)
外部的资源:
- 主页 [gitlab.com]
相似软件包:
genome-scale comparison of biological sequences
LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:
* Comparing large (e.g. mammalian) genomes. * Mapping lots of sequence tags onto a genome.
The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.
其他与 last-align 有关的软件包
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- dep: libc6 (>= 2.38)
- GNU C 语言运行库:共享库
同时作为一个虚包由这些包填实: libc6-udeb
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- dep: libgcc-s1 (>= 4.2)
- GCC 支持库
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- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库,第3版
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时
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- rec: parallel
- build and execute command lines from standard input in parallel
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- rec: python3-pil
- Python Imaging Library (Python3)