全部搜索项
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ 源代码: last-align  ]

软件包:last-align(1542-1 以及其他的)

last-align 的相关链接

Screenshot

Debian 的资源:

下载源码包 last-align

维护小组:

外部的资源:

相似软件包:

genome-scale comparison of biological sequences

LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:

 * Comparing large (e.g. mammalian) genomes.
 * Mapping lots of sequence tags onto a genome.

The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.

标签: 生物学: 核酸, 领域: 生物学, field::biology:bioinformatics, implemented-in::c++, 角色: 程序

其他与 last-align 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • 增强

下载 last-align

下载可用于所有硬件架构的
硬件架构 版本 软件包大小 安装后大小 文件
i386 1542-1+b1 2,176.7 kB17,631.0 kB [文件列表]