软件包：kmc（3.2.4+dfsg-1 以及其他的）
kmc 的相关链接
Debian 的资源：
下载源码包 kmc：
维护小组：
- Debian Med Packaging Team (QA 页面, 邮件存档)
- Andreas Tille (QA 页面)
- Jorge Soares (QA 页面)
- Sascha Steinbiss (QA 页面)
- Kevin Murray (QA 页面)
- Étienne Mollier (QA 页面)
外部的资源：
- 主页 [sun.aei.polsl.pl]
相似软件包：
count kmers in genomic sequences
The kmc software is designed for counting k-mers (sequences of consecutive k symbols) in a set of reads. K-mer counting is important for many bioinformatics applications, e.g. developing de Bruijn graph assemblers.
Building de Bruijn graphs is a commonly used approach for genome assembly with data from second-generation sequencing. Unfortunately, sequencing errors (frequent in practice) result in huge memory requirements for de Bruijn graphs, as well as long build time. One of the popular approaches to handle this problem is filtering the input reads in such a way that unique k-mers (very likely obtained as a result of an error) are discarded.
Thus, KMC scans the raw reads and produces a compact representation of all non-unique reads accompanied with number of their occurrences. The algorithm implemented in KMC makes use mostly of disk space rather than RAM, which allows one to use KMC even on rather typical personal computers. When run on high-end servers (what is necessary for KMC competitors) it outperforms them in both memory requirements and speed of computation. The disk space necessary for computation is in order of the size of input data (usually it is smaller).
其他与 kmc 有关的软件包
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- dep: libc6 (>= 2.38)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.5)
- GCC 支持库
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- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
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- dep: zlib1g (>= 1:1.2.6)
- 压缩库 - 运行时