软件包：alien-hunter（1.7-10）

[ 源代码： alien-hunter  ]

Interpolated Variable Order Motifs to identify horizontally acquired DNA

Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automatically loaded into Artemis genome viewer freely available at: http://www.sanger.ac.uk/Software/Artemis/.

标签: 领域: 生物学, 结构生物学, 实做语言: implemented-in::java, implemented-in::perl, 用户接口: 命令行, 角色: role::program, scope::utility, Purpose: Analysing

其他与 alien-hunter 有关的软件包

• dep: libbiojava-java (>= 1:1.9.5+dfsg)

  Java API to biological data and applications (default version)

• dep: libbytecode-java

  Java bytecode manipulation library

• dep: libcommons-cli-java

  Command line arguments and options parsing library

• dep: libcommons-collections3-java

  Apache Commons Collections - Extended Collections API for Java

• dep: libcommons-dbcp-java

  Database Connection Pooling Services

• dep: libcommons-pool-java

  pooling implementation for Java objects

• sug: bioperl

  用于处理计算分子生物学的 Perl 工具

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