软件包：bamtools（2.5.2+dfsg-6 以及其他的）

bamtools 的相关链接

Debian 的资源：

下载源码包 bamtools：

维护小组：

外部的资源：

主页 [github.com]

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toolkit for manipulating BAM (genome alignment) files

BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research.

BamTools provides both a C++ API for BAM file support as well as a command-line toolkit.

This is the bamtools command-line toolkit.

Available bamtools commands:

 convert  Converts between BAM and a number of other formats
 count    Prints number of alignments in BAM file(s)
 coverage Prints coverage statistics from the input BAM file
 filter   Filters BAM file(s) by user-specified criteria
 header   Prints BAM header information
 index    Generates index for BAM file
 merge    Merge multiple BAM files into single file
 random   Select random alignments from existing BAM file(s), intended more
          as a testing tool.
 resolve  Resolves paired-end reads (marking the IsProperPair flag as needed)
 revert   Removes duplicate marks and restores original base qualities
 sort     Sorts the BAM file according to some criteria
 split    Splits a BAM file on user-specified property, creating a new BAM
          output file for each value found
 stats    Prints some basic statistics from input BAM file(s)

标签: 实做语言: C++, 角色: 程序

其他与 bamtools 有关的软件包

依赖

推荐

建议

增强

dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

dynamic library for manipulating BAM (genome alignment) files
dep: libc6 (>= 2.38)

GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC 支持库
dep: libjsoncpp26 (>= 1.9.6)

library for reading and writing JSON for C++
dep: libstdc++6 (>= 13.1)

GNU 标准 C++ 库，第3版

下载 bamtools

下载可用于所有硬件架构的
硬件架构	版本	软件包大小	安装后大小	文件
amd64	2.5.2+dfsg-6+b1	201.7 kB	690.0 kB	[文件列表]