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[ 源代码: sra-sdk  ]

软件包:sra-toolkit(3.0.9+dfsg-6)

sra-toolkit 的相关链接

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Debian 的资源:

下载源码包 sra-sdk

维护小组:

外部的资源:

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警告:这个软件包来自于 experimental 发行版。这表示它很有可能表现出不稳定或者出现 bug ,甚至是导致资料损失。请务必在使用之前查阅 changelog 以及其他潜在的文档。

utilities for the NCBI Sequence Read Archive

Tools for reading the SRA archive, generally by converting individual runs into some commonly used format such as fastq.

The textual dumpers "sra-dump" and "vdb-dump" are provided in this release as an aid in visual inspection. It is likely that their actual output formatting will be changed in the near future to a stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON THE OUTPUT FORMAT SEEN IN THIS RELEASE.

Other tools distributed in this package are:

 abi-dump, abi-load
 align-info
 bam-load
 cache-mgr
 cg-load
 copycat
 fasterq-dump
 fastq-dump, fastq-load
 helicos-load
 illumina-dump, illumina-load
 kar
 kdbmeta
 latf-load
 pacbio-load
 prefetch
 rcexplain
 remote-fuser
 sff-dump, sff-load
 sra-pileup, sra-sort, sra-stat, srapath
 srf-load
 test-sra
 vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock,
 vdb-passwd, vdb-unlock, vdb-validate

The "help" information will be improved in near future releases, and the tool options will become standardized across the set. More documentation will also be provided documentation on the NCBI web site.

Tool options may change in the next release. Version 1 tool options will remain supported wherever possible in order to preserve operation of any existing scripts.

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