[ 源代码： qcumber ]
软件包：qcumber（1.0.14+dfsg-1）
quality control of genomic sequences
QCPipeline is a tool for quality control. The workflow is as follows:
1. Quality control with FastQC 2. Trim Reads with Trimmomatic 3. Quality control of trimmed reads with FastQC 4. Map reads against reference using bowtie2 5. Classify reads with Kraken
其他与 qcumber 有关的软件包
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- dep: debconf (>= 0.5)
- Debian 配置管理系统
- 或者 debconf-2.0
- 本虚包由这些包填实： cdebconf, cdebconf-udeb, debconf
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- dep: libjs-angularjs
- lets you write client-side web applications as if you had a smarter browser
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- dep: libjs-bootstrap
- HTML, CSS and JS framework
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- dep: libjs-d3
- JavaScript visualization library for HTML and SVG
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- dep: libjs-jquery
- JavaScript library for dynamic web applications
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
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- dep: python3-biopython
- Python library for bioinformatics (implemented in Python 3)
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- dep: python3-jinja2
- small but fast and easy to use stand-alone template engine
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
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- dep: r-base-core
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-savr
- GNU R parse and analyze Illumina SAV files
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- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- dep: r-cran-quantreg
- GNU R package for quantile regression