软件包：concavity（0.1+dfsg.1-4）

[ 源代码： concavity  ]

predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

其他与 concavity 有关的软件包

• dep: libc6 (>= 2.4)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  GCC 支持库

• dep: libstdc++6 (>= 5)

  GNU 标准 C++ 库，第3版

• sug: conservation-code

  protein sequence conservation scoring tool

• sug: pymol

  Molecular Graphics System

下载 concavity

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
i386	302.6 kB	629.0 kB	[文件列表]