软件包：dindel（1.01-wu1-3+dfsg-1 以及其他的）
dindel 的相关链接
Debian 的资源：
下载源码包 dindel：
- [dindel_1.01-wu1-3+dfsg-1.dsc]
- [dindel_1.01-wu1-3+dfsg.orig.tar.xz]
- [dindel_1.01-wu1-3+dfsg-1.debian.tar.xz]
维护小组：
- Debian Med Packaging Team (QA 页面, 邮件存档)
- Animesh Sharma (QA 页面)
- Steffen Moeller (QA 页面)
- Andreas Tille (QA 页面)
外部的资源：
- 主页 [github.com]
相似软件包：
determines indel calls from short-read data
Dindel is a program for calling small indels from short-read sequence data ('next generation sequence data'). It currently is designed to handle only Illumina data.
Dindel requires a BAM file containing the read-alignments as input. It then extracts candidate indels from the BAM file, and realigns the reads to candidate haplotypes consisting of these candidate indels. If there is sufficient evidence for an alternative haplotype to the reference, it will call an indel.
It is possible to test indels discovered with other methods using Dindel, for instance longer indels obtained through assembly methods. Dindel will then realign both mapped and unmapped reads to see if the candidate indel is supported by the reads.
Dindel outputs both genotype likelihoods and includes a script to convert these to a VCF file with indel and SNP calls.
There is basic support for outputting realigned BAM files for each realignment-window. These realigned BAM files can be used to call SNPs near (candidate) indels.
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