[ 源代码： kleborate ]
软件包：kleborate-examples（2.0.1-1）
tool to screen Klebsiella genome assemblies (example data)
Kleborate is a tool to screen Klebsiella genome assemblies for:
* MLST sequence type * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.) * ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb) * virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2) * antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive
This package provides example data end tests that are used in autopkgtest.
其他与 kleborate-examples 有关的软件包
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- rec: kleborate
- tool to screen Klebsiella genome assemblies