[ 源代码： mindthegap ]
软件包：mindthegap（2.2.2-2）
performs detection and assembly of DNA insertion variants in NGS read datasets
Designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome. It takes as input a set of reads and a reference genome. It outputs two sets of FASTA sequences: one is the set of breakpoints of detection insertion sites, the other is the set of assembled insertions for each breakpoint. MindTheGap can also be used as a genome assembly finishing tool. It can fill the gaps between a set of input contigs without any a priori on their relative order and orientation. It outputs the results in gfa file.
其他与 mindthegap 有关的软件包
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- dep: libc6 (>= 2.8)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgatbcore3 (>= 1.4.2+dfsg)
- dynamic library of the Genome Analysis Toolbox
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- dep: libgcc-s1 (>= 4.2)
- GCC 支持库
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- dep: libhdf5-103-1
- HDF5 C runtime files - serial version
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- dep: libstdc++6 (>= 9)
- GNU 标准 C++ 库，第3版