软件包：ecopcr（1.0.1+dfsg-2）

[ 源代码： ecopcr  ]

estimate PCR barcode primers quality

DNA barcoding is a tool for characterizing the species origin using a short sequence from a standard position and agreed upon position in the genome. To be used as a DNA barcode, a genome locus should vary among individuals of the same species only to a minor degree and it should vary among species very quickly. From a practical point of view, a barcode locus should be flanked by two conserved regions to design PCR primers. Several manually discovered barcode loci like COI, rbcL, 18S, 16S and 23S rDNA, or trnH-ps are routinely used today, but no objective function has been described to measure their quality in terms of universality (barcode coverage, Bc ) or in terms of taxonomical discrimination capacity (barcode specificity, Bs ).

ecoPCR is an electronic PCR software developed by LECA and Helix-Project. It helps to estimate Barcode primers quality. In conjunction with OBITools you can postprocess ecoPCR output to compute barcode coverage and barcode specificity. New barcode primers can be developed using the ecoPrimers software

其他与 ecopcr 有关的软件包

• dep: libc6 (>= 2.29)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: python3

  交互式高级面向对象语言（默认 python3 版本）

• dep: python3-reportlab

  ReportLab library to create PDF documents using Python3

• dep: zlib1g (>= 1:1.1.4)

  压缩库 - 运行时

下载 ecopcr

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
amd64	55.2 kB	234.0 kB	[文件列表]
arm64	54.8 kB	222.0 kB	[文件列表]
armel	52.2 kB	206.0 kB	[文件列表]
armhf	50.4 kB	178.0 kB	[文件列表]
i386	55.7 kB	234.0 kB	[文件列表]
mips64el	55.1 kB	243.0 kB	[文件列表]
mipsel	54.8 kB	228.0 kB	[文件列表]
ppc64el	58.8 kB	354.0 kB	[文件列表]
s390x	52.7 kB	230.0 kB	[文件列表]