软件包：kallisto（0.46.2+dfsg-2）
kallisto 的相关链接
Debian 的资源：
下载源码包 kallisto：
- [kallisto_0.46.2+dfsg-2.dsc]
- [kallisto_0.46.2+dfsg.orig.tar.xz]
- [kallisto_0.46.2+dfsg-2.debian.tar.xz]
维护小组：
外部的资源：
- 主页 [pachterlab.github.io]
相似软件包：
near-optimal RNA-Seq quantification
Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.
其他与 kallisto 有关的软件包
|
|
|
|
-
- dep: libc6 (>= 2.29)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: libgcc-s1 (>= 3.5)
- GCC 支持库
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
-
- dep: libstdc++6 (>= 6)
- GNU 标准 C++ 库，第3版
-
- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时